Links of Interest

Datasources

  • Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes
  • NCBI The American National Center for Biotechnology Information
  • Pubmed access through the Monash University library server. Note that only registered users can perform literature searches at this link
  • ExPASy Expert Protein Analysis System of the Swiss Institute of Bioinformatics
  • BLAST homepage at the National Center for Biotechnology Information
  • ORF finder at the National Center for Biotechnology Information
  • Multiple sequence alignments at the European Bioinformatics Institute

X-ray crystallography software we use in the lab

  • PHENIX is a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.
  • CCP4: Collaborative Computational Project No. 4 Software for Macromolecular X-Ray Crystallography
  • UCSF Chimera: Extensible Molecular Modelling System
  • PyMOL: A molecular visualization system, and an excellent resource for PyMOL (Including installation guides)

Molecular Modelling Software we use for CryoEM

  • Rosetta molecular modelling software:
  • Situs 2.8 software suite
  • NAMD: Scalable molecular dynamics (Great website which also includes detailed tutorials)
  • VMD: Visual Molecular Dynamics

University pages


Trevor Lithgow's Research Interests

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